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KB005489: How the X axis calculated for the Scatter plot- GeneSpring GX.
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How is X axis calculated for the Scatter plot?
The values seen in the scatter plot are normalized signal values. These values are generated after the thresholding, summarization, normalization and log transformation steps. The Scatter Plot shows a 2-D scatter of all entities in the active entity list.
If the active interpretation is non-averaged interpretation, the axes of the scatter plot will be the normalized signal values of the first two samples.
If the interpretation is averaged, the axes of the scatter plot will be the averaged normalized signal values of the samples in each condition.