GeneSpring GX Extras 

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GeneSpring GX Extras are useful additions to GeneSpring GX software. These include the Agilent Feature Extraction plug-in, MIAME-compliant standard attribute files, pathway files, the GeneSpring-R integration package, and other GeneSpring GX resources.

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• Documentation
• External Programs and Databases
• Genomes
• MIAME Compliance
• Pathways
• Physical Position View

Documentation
GeneSpring GX User Manual From the GeneSpring GX menu, select: Help » Update GeneSpring GX. Check the "I agree" box and click "Update documentation".		GeneSpring GX QuickStart Guide The GeneSpring GX QuickStart Guide is a brief outline of the steps needed to get up and running with GeneSpring GX.
GeneSpring GX Getting Started Guide The GeneSpring GX Getting Started Guide contains detailed information about the using GenSpring GX. Save unzipped files to your computer and open GeneSpring.html to view Guide.
External Programs and Databases
Connecting GeneSpring GX to Databases Learn to configure GeneSpring GX to connect directly to an Affymetrix GCOS database or a BASE MySQL database.		External Program Interface How do I link an external program to GeneSpring GX?
R-Integration Package The GeneSpring GX R-integration package will allow you to integrate R programs seamlessly into GeneSpring GX.		GeneSpring GX Affymetrix Plug-in The GeneSpring GX plug-ins allows GeneSpring GX to read Affymetrix CHP files and CEL files with RMA and GC-RMA normalization.
Resolver System - GeneSpring Connector Combine the power of the Rosetta Resolver System with GeneSpring GX.		GeneSpring-PathwayStudio Connector Integrate GeneSpring GX with the PathwayStudio tool of Adriadne Genomics.
GeneSpring GX and MetaCore Pathway Analysis Tool Integration The GeneSpring GX – MetaCore connector scripts will allow you to integrate GeneSpring GX version 7.3, and later, with the MetaCore pathway analysis tool.		GeneSpring GX and Ingenuity Pathways Analysis Integration The GeneSpring GX – IPA connector scripts will allow you to integrate GeneSpring GX with the Ingenuity Pathways Analysis tool.
Genomes
Genome Sequences Partial sequences for human, mouse and rat genomes that can be used in regulatory sequence searches - zip files and instructions.		GeneSpring GX Web Links Commonly used hypertext links to add during the genome installation.
Human NlaIII SAGE genome Download the Human NlaIII SAGE genome and guide to work with SAGE data in GeneSpring.
MIAME Compliance
Standard Attributes File A customizable XML file that can be used in GeneSpring GX or GeneSpring GX Workgroup to list all attributes that can be associated with a sample.
Pathways
GenMAPP Pathways Please note that GenMAPP pathways are included in the genomes available from within GeneSpring GX. To download a genome, open GeneSpring and select: File » Import Genome » Download a Standard Genome.		KEGG Pathways How do I get KEGG pathways into GeneSpring GX?
Physical Position View
Human Cytogenetic Band zip Zip file containing cytogenetic map locations for human chromosomes.		Mouse Cytogenetic Band zip Zip file containing cytogenetic map locations for mouse chromosomes.