Agilent | Tutorials - GeneSpring GX Software

Agilent Technologies offers an expanding series of self-paced tutorials on common tasks and activities for the GeneSpring platform. Learn how to load your data use filtering techniques, Venn diagrams, scripting, and more.

GeneSpring GX 9/10

Introductions
	Introduction to GeneSpring GX 10 New Features	(60 mins)
	Data Migration from GX7 to GX10	(5 mins)
	Translation-GX10	(4 mins)
Data Import & Set-up
	Quality Control on Samples	(9 mins)
	Quality control on entities	(9 mins)
	Data visualization in GeneSpring GX 10	(17 mins)
	Biological Genome creation	(5 mins)
	Analysis of real-time PCR data in GeneSpring GX and Comparison to Microarray Results	(74 mins)
	Identifying Significant Differences in Alternative Splicing Events in GeneSpring GX	(58 mins)
	Joint Analysis of miRNA and Gene Expression Data in GeneSpring GX	(60 mins)
	Data Analysis for Affymetrix Data (Companion Dataset)	Slide Set
	Data Analysis for Agilent Data (Companion Dataset)	Slide Set
DataAnalysis
	Statistical Analysis in GeneSpring GX 10	(5 mins)
	Updating Pathway Interactions	(6 mins)
	Exporting Option in GeneSpring GX 10	(7 mins)
	IPA integration in GeneSpring GX 10	(4 mins)
	miRNA Analysis using TargetScan	(7 mins)
	Principal Component Analysis	(6 mins)
	Fold Change Analysis	(8 mins)
	Pathway Experiment	(10 mins)
	Natural Language Processing (NLP)	(11 mins)
	Hierarchical Clustering	(7 mins)
	Importing BioPAX files	(3 mins)
	Network Analysis in GeneSpring GX- Building Relevant Networks from Genes of Interest	(66 mins)

GeneSpring GX 7.3

*Introductions*
	Introduction to Microarray Data Analysis (Registration required)	(87 mins)
	Introduction to GeneSpring GX	(11.4 mins)
	Updating GeneSpring GX	(4.8 mins)
	Basic GeneSpring GX Nomenclature	(13.0 mins)
*Data Import & Set-up*
	Genome Manager	(13.6 mins)
	Loading Affymetrix Data	(16.6 mins)
	Loading Agilent Data	(8.8 mins)
	Setting Parameters & Interpretations	(8.3 mins)
*DataAnalysis*
	Agilent 2-color Data Analysis	(17.0 mins)
*Quality Control*
	Filtering on Flags	(4.5 mins)
	Filtering on Control Signal	(3.5 mins)
*Filtering for Genes of Interest*
	Filtering on Fold Change	(5.4 mins)
	Finding Similar Gene Expression Profiles	(4.0 mins)
	Using the Cross-Gene Error Model	(10.8 mins)
	Two-Way ANOVA	(9.4 mins)
	One-Way ANOVA & Post-hoc Tests	(8.9 mins)
	Manipulating Venn Diagrams in PowerPoint	(4.3 mins)
	Filtering on Fold Change	(5.4 mins)
*Additional Features*
	Principal Components Analysis	(15.3 mins)
	Gene Tree & Condition Tree (Hierarchical Clustering)	(16.3 mins)
	Viewing Genes by Classification	(7.6 mins)